Scripts to convert external Files:
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- OneLetterFileToSeqFile.lua : Converts a file containing an amino acid sequence in one letter code to an XEASY seq file for easy read in to CARA. It ignores case and all characters which do not code for one of the 20 standard amino acids. Copy-paste from ExPASy or NCBI website directly into a
.aafile and convert to.seqfile!- UPDATE 8.Apr.05: Modified so that last line of
.seqfile is not empty.
- UPDATE 8.Apr.05: Modified so that last line of
- XeasySeqToThreeLetter.lua : Converts an xeasy
.seqfile including the charges like ARG+,GLU- to a file with simple three letter code which can be read into the standard template Start1.2.cara to create a new project with sequence. - XeasyToBmrBLabelsInProtonList.lua.lua : Converts a protonlist using Xeasy nomenclature into one using the Bmrb nomenclature so that the converted file can used to import the shifts into a repository derived from the standard template Start1.2.cara. Use this together with "XeasySeqToThreeLetter.lua" to import Xeasy projects