Edit detail for TemplatesPage revision 12 of 18

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Editor: damberger Time: 2013/10/01 18:26:42 GMT+2
Note: Updated the CARA template files

changed:
-  * <a href="Start1.3v8.cara">Start1.3v8.cara</a> Released June. 29, 2010 (Last Update: June 29 2010) (Version 8)
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-   - Template for assignment of 1H, 15N, and 13C/15N-labeled proteins with CARA 1.8.4 and upwards from F. Damberger</a>.  This template is compatible with BMRB nomenclature and has many new and improved scripts. The BMRB statistics are uploaded from bmrb on June, 25, 2010.
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-  * <a href="NucleicAcid1.1v1.cara">!NucleicAcid1.1v1.cara</a> Released Jul. 23 2010 (Last Update: Jul. 23 2010) (Version 1)
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-   - Template for assignment of 1H, 15N, and 13C/15N-labelled nucleic acids (RNA and DNA) with CARA 1.5.5 and upwards from F.Damberger. </a> This template is compatible with BMRB nomenclature and is a preliminary version. Feedback and improvements are welcome. It is possible to merge the ResidueType.s in this repository with those of the updated Repository for assignment of proteins. After opening the protein repository with CARA, use the menu function 'Import ResidueTypes' and select this respository to import the !NucleicAcid ResidueType.s
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-  * <a href="ProteinSolidState1.0v2.cara">!ProteinSolidState1.0v2.cara</a> Released Jan. 30 2013 (Last Update: Feb. 5 2013) (Version 2)
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-   - Template for assignment of 1H, 15N, and 13C/15N-proteins with CARA 1.8.4 and upwards from F.Damberger, A.Siemer & S.Hiller. </a> This template is compatible with BMRB nomenclature and is a preliminary version. It includes a set of SpectrumType.s intended for assignment using solid state spectra. Feedback and improvements are welcome. It is possible to merge the ResidueType.s in this repository with those of the updated Repository for assignment of nucleic acids. After opening the solid state protein repository with CARA, use the menu function 'Import ResidueTypes' and select the nucleic acids repository to import the !NucleicAcid ResidueType.s. You can also import the SpectrumType definitions from this solid-state repository into a standard protein solution NMR repository using a similar method.
  * <a href="ProteinLiquidState1.3v9.cara">!ProteinLiquidState1.3v9.cara</a> Released Oct. 01, 2013 (Last Update: Oct. 01 2013) (Version 9)

   - Template for assignment of 1H, 15N, and 13C/15N-labeled proteins using liquid state NMR spectra with CARA 1.8.4 and upwards from F. Damberger</a>.  This template is compatible with BMRB nomenclature. The BMRB statistics are uploaded from bmrb on June, 25, 2010. It is based upon the Start1.3v8.cara. Compared to this previous template, the !BBresidue ResidueType was modified to allow picking of HA2 and HA3 in GLY spin-systems during analysis of triple resonance spectra HBHA(CO)NH and HBHANH. A number of the included LUA scripts were updated.

  * <a href="NucleicAcids1.2.cara">!NucleicAcids1.2.cara</a> Released Oct. 01 2013 (Last Update: Oct. 01 2013) (Version 2)

   - Template for assignment of 1H, 15N, and 13C/15N-labelled nucleic acids (RNA and DNA) with CARA 1.8.4 and upwards from F.Damberger. </a> This template is compatible with BMRB nomenclature and is a preliminary version. Feedback and improvements are welcome. It is possible to merge the !ResidueTypes in this repository with those of the updated Repository for assignment of proteins. After opening the protein repository with CARA, use the menu function 'Import ResidueTypes' and select this respository to import the !NucleicAcid !ResidueTypes

  * <a href="ProteinSolidState1.0v3.cara">!ProteinSolidState1.0v3.cara</a> Released Oct. 01 2013 (Last Update: Oct. 01 2013) (Version 3)

   - Template for assignment of 1H, 15N, and 13C/15N-proteins using solidstate NMR spectra with CARA 1.8.4 and upwards from F.Damberger, A.Siemer & S.Hiller. </a> This template is compatible with BMRB nomenclature and is a preliminary version. It includes a set of !SpectrumTypes intended for assignment using solid state spectra. Feedback and improvements are welcome. It is possible to merge the !ResidueTypes in this repository with those of the updated Repository for assignment of nucleic acids. After opening the solid state protein repository with CARA, use the menu function 'Import ResidueTypes' and select the nucleic acids repository to import the !NucleicAcid !ResidueTypes. You can also import the SpectrumType definitions from this solid-state repository into a standard protein solution NMR repository using a similar method. It is based on the previous template !NucleicAcid1.1v1.cara. The !BBresidue ResidueType was modified as described for !ProteinLiquidState1.3v9.cara above.

CARA Templates page

This the download page for official CARA templates. These are empty repositories that set up the ResidueType? and SpectrumType? libraries and provide a set of useful LUA scripts. If you find any problems with these repositories, please report them to the CDT so that they can be fixed in the next template release. Thanks!

Template Repositories:

CARA 1.5.5 and up:

ProteinLiquidState1.3v9.cara Released Oct. 01, 2013 (Last Update: Oct. 01 2013) (Version 9)
- Template for assignment of 1H, 15N, and 13C/15N-labeled proteins using liquid state NMR spectra with CARA 1.8.4 and upwards from F. Damberger. This template is compatible with BMRB nomenclature. The BMRB statistics are uploaded from bmrb on June, 25, 2010. It is based upon the Start1.3v8.cara. Compared to this previous template, the BBresidue ResidueType? was modified to allow picking of HA2 and HA3 in GLY spin-systems during analysis of triple resonance spectra HBHA(CO)NH and HBHANH. A number of the included LUA scripts were updated.
NucleicAcids1.2.cara Released Oct. 01 2013 (Last Update: Oct. 01 2013) (Version 2)
- Template for assignment of 1H, 15N, and 13C/15N-labelled nucleic acids (RNA and DNA) with CARA 1.8.4 and upwards from F.Damberger. This template is compatible with BMRB nomenclature and is a preliminary version. Feedback and improvements are welcome. It is possible to merge the ResidueTypes in this repository with those of the updated Repository for assignment of proteins. After opening the protein repository with CARA, use the menu function Import ResidueTypes and select this respository to import the NucleicAcid ResidueTypes
ProteinSolidState1.0v3.cara Released Oct. 01 2013 (Last Update: Oct. 01 2013) (Version 3)
- Template for assignment of 1H, 15N, and 13C/15N-proteins using solidstate NMR spectra with CARA 1.8.4 and upwards from F.Damberger, A.Siemer & S.Hiller. This template is compatible with BMRB nomenclature and is a preliminary version. It includes a set of SpectrumTypes intended for assignment using solid state spectra. Feedback and improvements are welcome. It is possible to merge the ResidueTypes in this repository with those of the updated Repository for assignment of nucleic acids. After opening the solid state protein repository with CARA, use the menu function Import ResidueTypes and select the nucleic acids repository to import the NucleicAcid ResidueTypes. You can also import the SpectrumType? definitions from this solid-state repository into a standard protein solution NMR repository using a similar method. It is based on the previous template NucleicAcid1.1v1.cara. The BBresidue ResidueType? was modified as described for ProteinLiquidState1.3v9.cara above.

Other reference files (not needed to run CARA)

ecepp_bmrb.lib Ecepp library file for XEASY modified to be compatible with BMRB format files (e.g. *.prot files written out from projects generated within Start1.2.cara)

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